Citation info on google scholar. Preprints on arXiv & bioRxiv.

• A. Patch, A. Paz, K. J. Holt, E. R. Duboué, A. C. Keene, J. E. Kowalko, Y. Fily, Kinematic analysis of social interactions deconstructs the evolved loss of schooling behavior in cavefish, Plos one 17 (4), e0265894 (2022)
• C. Oliva, N. K. Hinz, W. Robinson, A. M. B. Thompson, J. Booth, L. M. Crisostomo, S. Zanineli, M. Tanner, E. Lloyd, M. A. O'Gorman, B. McDole, A. Paz, R. Kozol, E. B. Brown, J. E. Kowalko, Y. Fily, E. R. Duboué, A. C. Keene, Characterizing the genetic basis of trait evolution in the Mexican cavefish, Evolution & Development doi:10.1111/ede.12412 (2021)
• J. B. Jaggard, E. Lloyd, A. Yuiska, A. Patch, Y. Fily, J. E. Kowalko, L. Appelbaum, E. R. Duboué, A. C. Keene, Cavefish brain atlases reveal functional and anatomical convergence across independently evolved populations, Science advances 6 (38), eaba3126 (2020)
• Y. Fily, P. Subramanian, T. M. Schneider, R. Chelakkot, A. Gopinath, Buckling instabilities and spatio-temporal dynamics of active elastic filaments, J. R. Soc. Interface 17 (165), 20190794 (2020)
• Y. Fily, Self-propelled particle in a nonconvex external potential: Persistent limit in one dimension, J. Chem. Phys. 150 (17), 174906 (2019)
• Y. Fily, Y. Kafri, A. P. Solon, J. Tailleur, A. Turner, Mechanical pressure and momentum conservation in dry active matter, J. Phys. A: Math. Theor. 51, 044003 (2017)
• Y. Fily, A. Baskaran and M. F. Hagan, Equilibrium mappings in polar-isotropic confined active particles, Eur. Phys. J. E 40, 61 (2017)
• Y. Fily, A. Baskaran and M. F. Hagan, Active Particles on Curved Surfaces, arxiv:1601.00324 (2016)
• M. C. Marchetti, Y. Fily, S. Henkes, A. Patch, D. Yllanes, Minimal model of active colloids highlights the role of mechanical interactions in controlling the emergent behavior of active matter, Current Opinion in Colloid & Interface Science 21, 34 (2016)
• S. Henkes, D. A. Quint, Y. Fily, J. M. Schwarz, Rigid cluster decomposition reveals criticality in frictional jamming, Phys. Rev. Lett. 116, 028301 (2016) (cover of the January 15 issue)
• A. P. Solon, Y. Fily, A. Baskaran, M. E. Cates, Y. Kafri, M. Kardar, J. Tailleur, Pressure is not a state function for generic active fluids, Nature Physics 11, 673 (2015)
• Y. Fily, A. Baskaran and M. F. Hagan, Dynamics and density distribution of strongly confined noninteracting nonaligning self-propelled particles in a nonconvex boundary, Phys. Rev. E 91, 012125 (2015)
• Y. Fily, A. Baskaran and M. F. Hagan, Dynamics of Self-Propelled Particles Under Strong Confinement, Soft Matter 10, 5609 (2014)
• Y. Fily, S. Henkes and M. C. Marchetti, Freezing and phase separation of self-propelled disks, Soft Matter 10, 2132 (2014)
• N. Di Scala, E. Olive, Y. Lansac, Y. Fily and J.C. Soret, Elastic depinning transition of superconductor vortices, New J. Phys. 14 123027 (2012)
• Y. Fily, M. C. Marchetti, Athermal Phase Separation of Self-Propelled Particles with No Alignment, Phys. Rev. Lett. 108, 235702 (2012)
• Y. Fily, A. Baskaran, M. C. Marchetti, Cooperative Self-Propulsion of Active and Passive Rotors, Soft Matter 8, 3002-3009 (2012)
• S. Henkes, Y. Fily, M. C. Marchetti, Active Jamming: Self-propelled soft particles at high density, Phys. Rev. E 84, 040301 (2011)
• Y. Fily, E. Olive, N. Di Scala and J.C. Soret, Critical behavior of plastic depinning of vortex lattices in two dimensions: Molecular dynamics simulations, Phys. Rev. B 82, 134519 (2010)
• Y. Fily, E. Olive and J.C. Soret, Driven flux-line lattices in the presence of weak random columnar disorder: Finite-temperature behavior and dynamical melting of moving Bose glass, Phys. Rev. B 79, 212504 (2009)

• N. Di Scala, E. Olive, Y. Lansac, Y. Fily and J.C. Soret, Elastic depinning transition of superconductor vortices, J. Phys.: Conf. Ser. 400 022015 (2012)
• N. Di Scala, E. Olive, Y. Lansac, Y. Fily and J.C. Soret, Transition de dépiégeage élastique de vortex supraconducteurs, ESAIM: Proc. 35, 167 (2012)
• Y. Fily, E. Olive and J.C. Soret, Stability of the moving Bose glass at finite temperature, J. Phys.: Conf. Ser. 150 052054 (2009)
• E. Olive, Y. Fily and J.C. Soret, Plastic depinning of superconductor vortices, J. Phys.: Conf. Ser. 150 052201 (2009)

• Y. Fily, Depinning and high velocity dynamics of vortex lattices in type II superconductors: A numerical study, Ph.D. Dissertation (2009) (in French)